Arlequin suite ver 3.5
A new series of programs to perform population genetics analyses under Linux and Windows
Bibliographic Data
| ID | 23329588 |
|---|---|
| Authors | Laurent Excoffier (0000-0002-7507-6494, University of Bern, corresponding author), HEIDI E L LISCHER (0000-0002-9616-2092, University of Bern) |
| Year | 2010 |
| Volume | 10 |
| Issue | 3 |
| Pages | 564-567 |
| Publication date | 2010-05-01 |
| Peer Reviewed | Yes |
| Open Access | Yes |
| Type | ARTICLE |
| Venue | Molecular Ecology Resources (JOURNAL) |
| Journal identifiers | ISSN: 1755-098X • E-ISSN: 1755-0998 |
| Publisher | Wiley (PUBLISHER • GB) |
| DOI | 10.1111/j.1755-0998.2010.02847.x |
| PMID | 21565059 |
| OpenAlex | W1990074132 |
| Language | EN |
| Citations received | 315 |
| References cited | 15 |
We present here a new version of the Arlequin program available under three different forms: a Windows graphical version (W inarl35 ), a console version of Arlequin ( arlecore ), and a specific console version to compute summary statistics ( arlsumstat ). The command‐line versions run under both Linux and Windows. The main innovations of the new version include enhanced outputs in XML format, the possibility to embed graphics displaying computation results directly into output files, and the implementation of a new method to detect loci under selection from genome scans. Command‐line versions are designed to handle large series of files, and arlsumstat can be used to generate summary statistics from simulated data sets within an Approximate Bayesian Computation framework.
Biology · Computation · Graphics · Line (geometry) · Operating system · Population · Programming language · Series (stratigraphy) · Suite · XML · Computer Science · Gene expression and cancer classification · Genetic Associations and Epidemiology · Genetic Mapping and Diversity in Plants and Animals · Mathematics
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Folktale transmission in the Arctic provides evidence for high bandwidth social learning among hunter–gatherer groups
Potential drivers of samango monkey (Cercopithecus albogularis) population subdivision in a highly fragmented mountain landscape in northern South Africa
Genetic characterization and structure of the endemic Colombian silvery brown bare-face tamarin, Saguinus leucopus (Callitrichinae, Cebidae, Primates)
Population and genetic structure of a male-dispersing strepsirrhine, Galago moholi (Primates, Galagidae), from northern South Africa, inferred from mitochondrial DNA
Phylogenetic relationships, population demography, and species delimitation of the Alouatta belzebul species complex (Atelidae
Molecular phylogenetics and phylogeography of all the Saimiri taxa (Cebidae, Primates) inferred from mt COI and Coii gene sequences
Evolutionary history of the endangered Sanje mangabey (Cercocebus sanjei) in the Udzungwa Mountains, Tanzania
Limited genetic diversity in the critically endangered Mexican howler monkey (Alouatta palliata mexicana) in the Selva Zoque, Mexico
Performing monkeys of Bangladesh
Genetic analysis of hybridization between white-handed (Hylobates lar) and pileated (Hylobates pileatus) gibbons in a contact zone in Khao Yai National Park, Thailand
Evaluation of the contribution of D9S1120 to anthropological studies in Native American populations
Y-chromosome and surname analysis of the native islanders of San Andrés and Providencia (Colombia)
Admixture and genetic relationships of Mexican Mestizos regarding Latin American and Caribbean populations based on 13 Codis-STRs
Linajes paternos autóctonos de Gran Chaco analizados con microsatélites
Ancient DNA study of Cervus canadensis unearthed from the Royal Sacrificial Site of the Northern Wei Dynasty in Inner Mongolia Autonomous Region, China
The mitochondrial DNA landscape of modern Mexico
Genetic affinity of Muslim population in South India based on HLA-DQB1 and relationship with other Indian Populations
PPARG-Lyplal1 Multi-Allelic Combination Associated with Obesity and Overweight in Mexican Adolescent Females
Genetic Variability of Roma Population in Serbia
Prevalence of Low EPHX1 Activity‐Associated Genotypes in Himalayan Populations of India
The Investigation of the Evolutionary History of the Omani Population by Analysis of HLA Class I Polymorphism
Puede El Adn Mitocondrial Proporcionar Información Sobre La Etnogénesis De Los Pueblos Originarios Chilenos
Análisis histórico genético de la población de la región de Antofagasta revela discontinuidad en la costa y valles interiores
Impacto de la conquista hispánica en el Humedal del Paraná Inferior (Argentina). Una perspectiva histórica y genética mitocondrial
Ancient mitochondrial genome reveals matrilineal genetic inheritance of Chinese goats
Mitochondrial DNA Diversity and Evolutionary History of Native Human Populations of Argentinean Northwest Patagonia
Analysis of a Genetic Isolate
Identification of Whole Mitochondrial Genomes from Venezuela and Implications on Regional Phylogenies in South America
Genetic Structure of First Nation Communities in the Pacific Northwest
Genetic Diversity and Relationships of Tlingit Moieties
Population Structure Analyses Provide Insight into the Source Populations Underlying Rural Isolated Communities in Illinois
Genomic Heterogeneity of the Naga and Kuki Tribal Populations of Manipur, Northeast India
New Evidence of Ancient Mitochondrial DNA of the Southern Andes (Calchaquí Valleys, Northwest Argentina, 3,600–1,900 Years before Present)
STR Markers Unveil Microgeographic Differentiation over the Steep Mountainous Landscape of Jujuy Province, Northwest Argentina
Paternal Genetic Structure in Contemporary Mennonite Communities from the American Midwest
Genetic Affiliation of Pre-Hispanic and Contemporary Mayas through Maternal Linage
Genetic Analysis of Birnirk Inuit from the Alaskan North Slope
Ancient DNA Reveals Genetic Continuity in Mountain Woodland Caribou of the Mackenzie and Selwyn Mountains, Northwest Territories, Canada
Spatial Genetic Structure of Long-tailed Ducks ( Clangula hyemalis ) among Alaskan, Canadian, and Russian Breeding Populations + Supplementary Appendix Tables S1 and S2 (See Article Tools)
Analysis of Population Substructure in Two Sympatric Populations of Gran Chaco, Argentina
Female exogamy and gene pool diversification at the transition from the Final Neolithic to the Early Bronze Age in central Europe
HaploGrep 2
Years of Parallel Societies in Stone Age Central Europe
Ancient DNA Reveals Key Stages in the Formation of Central European Mitochondrial Genetic Diversity
GenAlEx 6.5
Maternal ancestry and lineages diversity of the Santander population from Colombia
Forensic efficiency and population genetic construction of Guizhou Gelao minority from Southwest China revealed by a panel of 23 autosomal STR loci
Forensic features and phylogenetic structure survey of four populations from southwest China via the autosomal insertion/deletion markers
Multifactorial Landscape Parses to Reveal a Predictive Model for Knee Osteoarthritis
Genome-wide SNPs reveal novel patterns of spatial genetic structure in Aedes albopictus (Diptera Culicidae) population in China
Historical DNA reveals climate adaptation in an endangered songbird
Spatial genetic structure of two forest plant metapopulations in dynamic agricultural landscapes
Alu polymorphisms in the Waorani tribe from the Ecuadorian Amazon reflect the effects of isolation and genetic drift
DNA polymorphisms associated with lactase persistence, self‐perceived symptoms of lactose intolerance, milk and dairy consumption, and ancestry, in the Uruguayan population
Molecular polymorphisms of the ABO locus as informative markers of ancestry in Central Argentina
Ancient DNA unveils population dynamics and integration in Pingcheng, the first Northern Wei capital established by the Tuoba Xianbei
The historical ecology of Pacific herring
Matrilines in Neolithic cattle from Orkney, Scotland reveals complex husbandry patterns of ancestry
Reindeer from Sámi offering sites document the replacement of wild reindeer genetic lineages by domestic ones in Northern Finland starting from 1400 to 1600 AD
Mitochondrial d-loop variation, coat colour and sex identification of Late Iron Age horses in Switzerland
Multi-scale archaeogenetic study of two French Iron Age communities
Ancient dog DNA reveals the human livelihood mode transitions during the late Neolithic in Northeastern China
From mountains to towns
Ancient mitochondrial DNA extraction from Bison bison long bones from Head-Smashed-In Buffalo Jump, Unesco World Heritage site
From wild to domestic reindeer – Genetic evidence of a non-native origin of reindeer pastoralism in northern Fennoscandia
How Mitochondrial DNA Can Write Pre-History
Genetic Population Flows of Southeast Spain Revealed by STR Analysis
The Southernmost Pre-Columbian Dogs in the Americas
Population variation of LIN28B in the Mediterranean
Measuring the impact of European colonization on Native American populations in Southern Brazil and Uruguay
The Eastern side of the Westernmost Europeans
Genetic heritage of Croatians in the Southeastern European gene pool—Y chromosome analysis of the Croatian continental and Island population
Exploring the mitochondrial DNA variability of the Amazonian Yanomami
Understanding influences of culture and history on mtDNA variation and population structure in three populations from A ssam, Northeast I ndia
Mid-Pleistocene and Holocene demographic fluctuation of Scots pine (Pinus sylvestris L.) in the Carpathian Mountains and the Pannonian Basin
A multidisciplinary investigation on the collective identity and social perspective of a medieval Islamic necropolis (eighth–tenth centuries) in Girona (modern Spain)
Genetic studies on the prehispanic population buried in Punta Azul cave (El Hierro, Canary Islands)
The mules that are not mules - metrics, morphology, archaeogenomics and mtDNA d-loop diversity in equids from Roman Switzerland
Ancient DNA preservation, genetic diversity and biogeography
Ancient DNA reveals evidence of abundant aurochs (Bos primigenius) in Neolithic Northeast China
Can we identify the Mexican hairless dog in the archaeological record? Morphological and genetic insights from Tizayuca, Basin of Mexico
Ancient DNA reveals the origin and history of early dogs in northeastern China
The origins of Chinese domestic cattle as revealed by ancient DNA analysis
Paleogenetic evidence of a Pyrenean Neolithic family
Maternal genetic link of a south Dravidian tribe with native Iranians indicating bidirectional migration
The paternal perspective of the Slovenian population and its relationship with other populations
Insights into Punic genetic signatures in the southern necropolis of Tharros (Sardinia)
Turkish Cypriot paternal lineages bear an autochthonous character and closest resemblance to those from neighbouring Near Eastern populations
Forensic features and phylogenetic analyses of the population of Nayagarh (Odisha), India using 23 Y-STRs
Genetic variation patterns of β-thalassemia in Western Andalusia (Spain) reveal a structure of specific mutations within the Iberian Peninsula
Development of an Okinawa panel for biogeographic inference of Okinawans
Genetic variability of CYP2D6 , CYP2B6 , CYP2C9 and CYP2C19 genes across the Italian Peninsula
Genetic admixture history and forensic characteristics of Turkic-speaking Kyrgyz population via 23 autosomal STRs
Allele frequencies and forensic parameters of 22 autosomal STR loci in a population of 983 individuals from Serbia and comparison with 24 other populations
UDP-glucuronosyltransferase genetic variation in North African populations
Molecular diversity of 23 Y-chromosome short tandem repeat loci in the population of Tuzla Canton, Bosnia and Herzegovina
The mitochondrial DNA HVI and HVII sequences and haplogroup distribution in a population sample from Vietnam
Distribution of genetic variants of oxidative stress metabolism genes
Population structure of Han population in China revealed by 41 STR loci
| Unique citing works | 315 |
|---|---|
| Citations per year | 17,5 |
| Citation span | 2008 - 2026 (19) |
| Citation velocity | current |
| Highly cited | Yes |
| Citation types | Neutral: 274 |