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The Optimal Machine Learning-Based Missing Data Imputation for the Cox Proportional Hazard Model

Bibliographic Data

ID22079570
AuthorsChao‐Yu Guo (0000-0002-9066-9933, National Yang Ming Chiao Tung University, corresponding author), Chao-Yu Guo (0000-0002-1872-7860), Ying-Chen Yang (0000-0002-8116-663X, National Yang Ming Chiao Tung University), Yi-Hau Chen, Yi‐Hau Chen (0000-0003-4038-9439, Institute of Statistical Science, Academia Sinica)
Year2021
Volume9
Pages680054-680054
Publication date2021-07-05
Open AccessYes
TypeARTICLE
VenueFrontiers in Public Health (JOURNAL)
Journal identifiersISSN: 2296-2565 • E-ISSN: 2296-2565
PublisherFrontiers Media SA (PUBLISHER • CH)
DOI10.3389/fpubh.2021.680054
PMID34291028
OpenAlexW3184084406
LanguageEN
Citations received1
References cited12

An adequate imputation of missing data would significantly preserve the statistical power and avoid erroneous conclusions. In the era of big data, machine learning is a great tool to infer the missing values. The root means square error (RMSE) and the proportion of falsely classified entries (PFC) are two standard statistics to evaluate imputation accuracy. However, the Cox proportional hazards model using various types requires deliberate study, and the validity under different missing mechanisms is unknown. In this research, we propose supervised and unsupervised imputations and examine four machine learning-based imputation strategies. We conducted a simulation study under various scenarios with several parameters, such as sample size, missing rate, and different missing mechanisms. The results revealed the type-I errors according to different imputation techniques in the survival data. The simulation results show that the non-parametric “missForest” based on the unsupervised imputation is the only robust method without inflated type-I errors under all missing mechanisms. In contrast, other methods are not valid to test when the missing pattern is informative. Statistical analysis, which is improperly conducted, with missing data may lead to erroneous conclusions. This research provides a clear guideline for a valid survival analysis using the Cox proportional hazard model with machine learning-based imputations

Data mining · Machine learning · Mean squared error · Missing data · Parametric statistics · Proportional hazards model · Statistics · Computer Science · Mathematics · Statistical Methods and Bayesian Inference · Statistical Methods and Inference · Statistical Methods in Clinical Trials · Artificial Intelligence

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Citations per year0.25
Citation span2022 - 2022 (1)
Highly citedNo

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