Iq-Tree 2
New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
Bibliographic Data
IQ-TREE (http://www.iqtree.org, last accessed February 6, 2020) is a user-friendly and widely used software package for phylogenetic inference using maximum likelihood. Since the release of version 1 in 2014, we have continuously expanded IQ-TREE to integrate a plethora of new models of sequence evolution and efficient computational approaches of phylogenetic inference to deal with genomic data. Here, we describe notable features of IQ-TREE version 2 and highlight the key advantages over other software.
Biology · Computational biology · Evolutionary biology · Gene · Inference · Machine learning · Phylogenetic network · Phylogenetic tree · Programming language · Tree (set theory) · Tree rearrangement · Artificial Intelligence · Computer Science · Evolution and Paleontology Studies · Genetic diversity and population structure · Genetics · Genomics and Phylogenetic Studies · Mathematics · Software
The medicinal uses, chemistry and phylogenetic relationships of ethnobotanically relevant South African Stachys species
Surveillance and Molecular Characterization of Sars-CoV-2 Infection in Non-Human Hosts in Gujarat, India
A Tale of Four Danish Cities
Using genomic epidemiology of Sars-CoV-2 to support contact tracing and public health surveillance in rural Humboldt County, California
Long-term surveillance of Sars-CoV-2 in the school community from Campo Grande, Brazil
Genetic Diversity of Antimicrobial Resistance and Key Virulence Features in Two Extensively Drug-Resistant Acinetobacter baumannii Isolates
Whole genome sequencing of neurotoxin-producing Clostridium species in New York state to bolster epidemiological investigations and reveal patterns of diversity and distribution
Transmission and microevolution of methicillin-resistant Staphylococcus aureus ST88 strain among patients, healthcare workers, and household contacts at a trauma and orthopedic ward
Genomic characterization of Sars-CoV-2 from an indigenous reserve in Mato Grosso do Sul, Brazil
Tuberculosis outbreak in a pre-primary and primary school in Barcelona, Spain
Genomic surveillance during the first two years of the Covid-19 pandemic – country experience and lessons learned from Türkiye
Unraveling tuberculosis patient cluster transmission chains
Overview of Sars-CoV-2 genomic surveillance in Central America and the Dominican Republic from February 2020 to January 2023
Sequencing analysis of Sars-CoV-2 cases in Slovenian long-term care facilities to support outbreak control
Integrative assessment of species-level genetic markers for the diagnosis of pathogenic Leptospira
Molecular characteristics and pathogenicity-associated phenotypes of methicillin-resistant Staphylococcus aureus sequence type 398 clinical isolates from a women and children’s hospital in Southwest China
Tübingen model study
The Delta variant wave in Tunisia
The increase in Sars-CoV-2 lineages during 2020–2022 in a state in the Brazilian Northeast is associated with a number of cases
Molecular and seroepidemiology of Sars-CoV-2 among influenza-like illness and severe Acute respiratory illness cases in selected health facilities in Ethiopia
Epidemiological Investigation and Virus Tracing of a Measles Outbreak in Zhoushan Islands, China, 2019
Ancient mitogenomes reveal the maternal diversity and genetic history of Ba state in the Western Zhou Dynasty
Ancient biomolecular analysis of 39 mammoth individuals from Kostenki 11-Ia elucidates Upper Palaeolithic human resource use
Guinea pig remains from the XVIth century Ojców castle (southern Poland)
Genetic characterization of horses in Early Medieval Poland
High altitude horse use and early horse transport in eastern Eurasia
Longitudinal surveillance of group A streptococcal pharyngitis and impetigo in remote Western Australian school children informs acute rheumatic fever prevention
Distribution and transmission of M. tuberculosis in a high-HIV prevalence city in Malawi
Integrated epidemiologic investigation and genomic confirmation of a Klebsiella pneumoniae neonatal sepsis outbreak in Botswana
Geospatial and phylogenetic clustering of acute and recent HIV infections in Lilongwe, Malawi
Continued T12 transmission and shared antibiotic resistance during 2018–2023 Vibrio cholerae outbreaks in Cameroon
Genomics-informed outbreak investigations of Sars-CoV-2 using civet
Implementation of genomic surveillance of Sars-CoV-2 in the Caribbean
Genomic diversity of diarrheagenic multidrug-resistant Escherichia coli across asymptomatic children and livestock in Nairobi, Kenya
Epidemiological and phylogenetic analyses of public Sars-CoV-2 data from Malawi
Coronavirus and Paramyxovirus Shedding by Bats in a Cave and Buildings in Ethiopia
An Outbreak of Sars-CoV-2 in Captive Armadillos Associated with Gamma Variant in Argentina
A Reassessment of the Genomic Ancestry of the World's Largest Captive Baboon Colony
Genetic Diversity, Genetic Structure, and Demographic History of Black Snub‐Nosed Monkey ( Rhinopithecus strykeri ) in the Gaoligong Mountains, Southwestern China
Mammalian Diversity and Matses Ethnomammalogy in Amazonian Peru Part 5. Rodents
Revised Evolutionary and Taxonomic Synthesis for Parrots (Order
Comparative Morphology of the Stingless Bees (Apidae, Meliponini) and Its Phylogenetic Relevance
Fourteen New, Endemic Species of Shrew (Genus Crocidura) from Sulawesi Reveal a Spectacular Island Radiation
Ganoderma lucidum sporoderm-broken spore powder alleviates kidney aging by modulating gut microbiota
Gelada (Theropithecus gelada) genomic diversity sheds light on the biogeography of an endemic species of the Ethiopian highlands
Ancient mitochondrial genomes from Coastal Patagonia
Yeast Communities and Traditional Knowledge in Fermented Cactus Fruit Beverages
Inside a monkey with rhea feathers
| Unique citing works | 48 |
|---|---|
| Citations per year | 8 |
| Citation span | 2020 - 2026 (7) |
| Citation velocity | current |
| Highly cited | No |
| Citation types | Neutral: 47 |