Fast gapped-read alignment with Bowtie 2
Bibliographic Data
| ID | 23327043 |
|---|---|
| Authors | Ben Langmead (0000-0003-2437-1976, University of Maryland, College Park, corresponding author), Steven L Salzberg (0000-0002-8859-7432, Johns Hopkins University) |
| Year | 2012 |
| Volume | 9 |
| Issue | 4 |
| Pages | 357-359 |
| Publication date | 2012-04-01 |
| Open Access | Yes |
| Type | ARTICLE |
| Venue | Nature Methods (JOURNAL) |
| Journal identifiers | ISSN: 1548-7091 • E-ISSN: 1548-7105 |
| Publisher | Springer Science and Business Media LLC (PUBLISHER) |
| DOI | 10.1038/nmeth.1923 |
| PMID | 22388286 |
| PMCID | PMC3322381 |
| OpenAlex | W2170551349 |
| Language | EN |
| Citations received | 69 |
| References cited | 13 |
Algorithm · Computer hardware · Dynamic programming · Flexibility (engineering) · Index (typography) · Operating system · Parallel computing · Programming language · Sensitivity (control systems) · Throughput · Algorithms and Data Compression · Computer Science · Genomics and Phylogenetic Studies · Mathematics · RNA and protein synthesis mechanisms · Software
No genetic evidence yet for hinnies at Mazongshan (400-160 BCE), northwestern China
Small-seeded grasses in Bronze Age burial contexts
No evidence for mitochondrial genetic variability in the largest population of critically endangered Tonkin snub-nosed monkeys in Vietnam
Primer genoma mitocondrial en restos humanos de la Costa de Santa Cruz, Argentina
Archaeogenomic identification of ancient plant and feather remains from Túcume, Peru
Postglacial viability and colonization in North America’s ice-free corridor
Diet rapidly and reproducibly alters the human gut microbiome
A new coronavirus associated with human respiratory disease in China
Fastp
Trimmomatic
Eager
Late Holocene Maize Diversity and Cultural Remains from the Northern Neotropics
Alterations of the Gut Microbiome Associated to Methane Metabolism in Mexican Children with Obesity
Intron retention as an excellent marker for diagnosing depression and for discovering new potential pathways for drug intervention
Metagenomic Analysis of Microbial Contamination in the U.S. Portion of the Tijuana River Watershed
Identification and Genetic Characterization of Mers-Related Coronavirus Isolated from Nathusius’ Pipistrelle (Pipistrellus nathusii) near Zvenigorod (Moscow Region, Russia)
Differential H3K9me2 heterochromatin levels and concordant mRNA expression in postmortem brain tissue of individuals with schizophrenia, bipolar, and controls
Single prolonged stress induces behavior and transcriptomic changes in the medial prefrontal cortex to increase susceptibility to anxiety-like behavior in rats
Fast, Ungapped Reads Mapping Using Squid
Nine-Year Nationwide Environmental Surveillance of Hepatitis E Virus in Urban Wastewaters in Italy (2011–2019)
Genero e hierarquia . A costela de adao revisitada
Broad-spectrum subsistence facilitated early sedentism in the southern Mongolian Plateau revealed by sedimentary ancient DNA
The Bioinformatics Virtual Coordination Network
The linkage between microbial community dynamics and urbanization age
Effects of combined ciprofloxacin and Neulasta therapy on intestinal pathology and gut microbiota after high-dose irradiation in mice
Repeat infections with chlamydia in women may be more transcriptionally active with lower responses from some immune genes
Epidemiological and Genomic Analysis of Sars-CoV-2 in 10 Patients From a Mid-Sized City Outside of Hubei, China in the Early Phase of the Covid-19 Outbreak
Next generation sequencing as a panacea for antibiotic susceptibility testing
Microbial functional genes within soil aggregates drive organic carbon mineralization under contrasting tillage practices
Microbial structure of carbon source utilization in rice rhizosphere and non‐rhizosphere soils with different short‐term tillage management
Pathways and Risks of Antibiotic Resistance Genes Along a Rural to Urban River Gradient
Historical management of equine resources in France from the Iron Age to the Modern Period
Ancient DNA and paleoproteomic analysis on Roman Imperial-era individuals from Histria, Romania
The secrets of Sobek – A crocodile mummy mitogenome from ancient Egypt
Holocene biodiversity shifts and human-environment interactions revealed by sedimentary ancient DNA in the Horqin Sandy Land, Northeast China
Assessing the predictive taxonomic power of the bony labyrinth 3D shape in horses, donkeys and their F1-hybrids
First detection of one of the tick-borne lymphadenopathy (Tibola) etiological agent in ticks from a highly frequented sub-urban forest near Paris, France
Regular Plasmodium falciparum importation onto Bioko Island, Equatorial Guinea, hampers malaria elimination from the island
Metagenomic Analysis Reveals Previously Undescribed Bat Coronavirus Strains in Eswatini
Sedimentary ancient DNA metagenomic analysis provides new insights into farming in central Norway from the Bronze Age to late Medieval period
Unveiling the Evolutionary History of c is‐ Andean Alouatta (Atelidae, Alouattinae) Through Mitochondrial Genomes
Placental and Fetal Microbiota in Rhesus Macaque
Application of PE‐Radseq to the study of genomic diversity and divergence of two Brazilian marmoset species ( Callithrix jacchus and C. penicillata )
Fulfilled Mind, Healthy Gut? Relationships of Eudaimonic Psychological Well-Being With the Gut Microbiome in Postmenopausal Women
Ante una nueva civilidad urbana. Capitalismo cognitivo, habitus y gentrificación
Thanatomicrobiome composition profiling as a tool for forensic investigation
The mechanism of Qing-Fei-Yin decoction against influenza
PuRenDan alleviates type 2 diabetes mellitus symptoms by modulating the gut microbiota and its metabolites
A triple combination strategy of UHPLC-MSn, hypolipidemic activity and transcriptome sequencing to unveil the hypolipidemic mechanism of Nelumbo nucifera alkaloids
Inhibiting multidrug resistant Shigella flexneri using comparative genomics guided In vitro and In silico screening
The n-butanol fraction of the Xiao-Chai-Hu decoction alleviates the endocrine disturbance in the liver of mice exposed to lead
Naoxintong restores ischemia injury and inhibits thrombosis via COX2-Vegf/ NFκB signaling
Population genetics of wild Macaca fascicularis with low‐coverage shotgun sequencing of museum specimens
Bayesian analyses of Yemeni mitochondrial genomes suggest multiple migration events with Africa and Western Eurasia
High‐resolution mitochondrial DNA analysis sheds light on human diversity, cultural interactions, and population mobility in Northwestern Amazonia
Comparison of extraction methods for recovering ancient microbial DNA from paleofeces
The efficacy of whole human genome capture on ancient dental calculus and dentin
Matriclans shape populations
From bones to sediments
Análisis Del Genoma Mitocondrial De Dos Individuos Inhumados en El Sitio Arqueológico Cg14e01 "Isla Larga" (Rocha, Uruguay)
Filogeografía de mitogenomas indígenas de Uruguay
Ancient DNA insights into Neolithic bone-tool use on the Tibetan Plateau
The necessity for authentication of ancient DNA from archaeological artefacts
Bulk-bone ancient metagenomics reveals the transport of South Asian fish across the Himalayas in the 8th century CE
Sedimentary ancient DNA from an artificial water feature in a regional city of the Tang Dynasty reveals the use of plant and animal resources by urban residents in the Central Plains, China
The Mesolithic Hunter–Gatherer Camp Site at Sammakko in Norrbotten, Northernmost Sweden—Archeological Finds and Palaeoenvironmental Reconstruction
Different responses of cyanobacterial communities to climate change and anthropogenic activities revealed by the 500-year sedimentary record of Lake Daihai
The elusive parasite
Ancient DNA provides insights into 4,000 years of resource economy across Greenland
| Citations per year | 2.09 |
|---|---|
| Citation span | 1993 - 2026 (34) |
| Highly cited | No |